Aaron Darling, faculty member of University of Technology Sydney (who used to work with me here at UC Davis) has a very important and interesting read on his blog: Not so fast, FastTree. In it he discusses some informatics archaeology he did (digging around in some code) regading the program FastTree which many researchers have been using …
Quick post here. I discovered this a few weeks ago but just have not had time to write about it in detail or even scrutinize it exceptionally carefully but it seems of interest to the theme here at microBEnet: Invisible City Life: The Urban Microbiome | The Nature of Cities. By Marina Alberti from the University of …
IBM and Mars put out a joint press release today announcing a new effort to use metagenomics to study microorganisms in the food supply chain. The new initiative, called the Sequencing the Food Supply Chain Consortium (SFSC), will use metagenomics and metatranscriptomics to establish what they call a “microbial baseline” that can later be used …
Nice article on the Your Wild Life blog: Your Wild Life — A Whole New Way of Doing Citizen Science, Maybe. It discusses a collaobration between Your Wild Life and Holly Bik on visuliazation data from the citizen science – microbiome work that has been a part of the Your Wild Life project. The collaboration has involved …
I am starting to think a lot about the connections between architecture and microbiology – in part in preparation for the American Institute for Architects Annual Meeting in Atlanta May 14-16 where I will be participating in sessions on “microbes in the built environment” The tentative details for the sessions are Session: Microbes in the Built Environment: Perspectives …
Bill Walsh of The Healthy Building Network has posted a story on the subject,”the Dirt on Antimicrobials” that covers the health effects concerns from the chemicals themselves but does not address the currently popular subject of the health harm or benefits from the presence of and exposures to the multitude of microbes in, on, and …
These are just awesome: 4 Ventilation Quotes That Will Rock Your IAQ World. Maybe they are familiar to people who work on indoor air quality but I had never heard them . Thanks to the Energy Vanguard Blog for posting these. I particularly like “If there is a pile of manure in a space, do not try …
Some interesting things in this post from Kelly Rae Chi at the Scientist: Metagenomics Mash-Up. It includes a discussion of metagenomics generally and then some metagenomic tools including MEGAN5, Kraken, MG-RAST, Metavir, and HI-C. The section on HI-C discusses the work of Chris Beitel in my lab. If you are doing metagenomic analysis or considering it or …
Quick post here. The Robert Wood Johnson Foundation has a podcast on “Pioneering Ideas” and it covers microbiomes of the built environment this week:1 RWJF Pioneering Ideas Podcast: Episode 5 | Conspiracy Theories, Microbiomes & More – Robert Wood Johnson Foundation. They also give a nice plug for microBEnet. From their site: Microbiomes and Design (26:25) — …
Have you ever said “I boiled a jar to disinfect it”? Well, you were wrong. You should have used “I boiled a jar to sanitize it”. Disinfectants refer to chemical substances used to kill microbes. Therefore, something has been disinfected only if a chemical was used. Heating or irradiating surfaces are methods of either sterilizing (free …