Backyard lab sequencing party: MinION “fieldwork”

So we recently had two problems with a common solution: #1, we hadn’t had a lab social function in awhile #2, we wanted to try using the MinION sequencer in a “field” setting, but weren’t quite ready to try it without electricity on hand. The obvious solution, have the entire lab over to my house …

Backyard chickens linked to increasing Salmonella outbreaks

So I feel like this shouldn’t need to be said… but clearly it does.  Don’t kiss chickens or bring them into your bedroom.  Should my opinion not carry enough weight, simply check out this new report from the CDC “Outbreaks of Human Salmonella Infections Associated with Live Poultry, United States, 1990—2014”.  Abstract below.  Major highlights …

New papers on Microbiology of the Built Environment, September 3, 2016

Microbes in the hospital Extreme Dysbiosis of the Microbiome in Critical Illness — Daniel McDonald — mSphere (OA) (…)  A trial with prospective monitoring of the intensive care unit (ICU) patient microbiome using culture-independent techniques to confirm and characterize this dysbiosis is thus urgently needed. Characterizing ICU patient microbiome changes may provide first steps toward the …

Hen housing trade off study results released

Just a quick post here.  Multiple stories out about the Laying Hen Housing Research Project by the Coalition for Sustainable Egg Supply that maybe of interest. From: Hen housing trade offs: Food safety, workers and consumers | Food Safety News As it turns out, the food stores and restaurant chains promising to sell only cage-free eggs …

Chicken Probiotics?

Just a quick post here on an NPR story that caught my attention “Giving Chickens Bacteria … To Keep Them Antibiotic-Free”.  Unlike with humans where determining the effect of probiotics is complicated by a lot of variation in the population (genetic, cultural, diet, etc.), with a whole bunch of chickens it’s easier to measure the …

Chickens and eggs in the built environment

The built environment includes housing for livestock, which may have consequences for the transmission of zoonotic diseases in our food supply. Different animal housing strategies provide an ideal opportunity to test the effects of crowding and degree of confinement on the microbiology of built environments. In the case of egg-laying chickens, housing strategies include conventional cages, …