Legionella sequencing in tap water and clinical isolates from Flint, MI

So this was a very interesting paper to be involved in.  On the one hand all our lab really did was to facilitate some genome sequencing and help with the assemblies, validation of those assemblies, and some genomics work.   Standard fare for the lab.  But… these were over 100 Legionella pneumophila isolates collected from either …

Alleged mishandling of Flint Legionnaire’s outbreak leads to manslaughter charges for MI health chief

This is a pretty big deal. Nick Lyon is the highest-ranking state official to be charged in the crisis. Source: Flint Water Crisis: Michigan Health Chief Charged With Involuntary Manslaughter : NPR The director of the Department of HHS in Michigan, Nick Lyon, has been charged with involuntary manslaughter in relation to the Flint, MI …

Another possible microbe-related unintended consequence of the Flint water crisis 

The NY Times is reporting that an outbreak of Shigellosis in Flint may be connected to the water crisis there (in that people’s changes in their hand cleaning and other washing behaviors due to the water may have contributed to the outbreak).  See the story (linked below) for more details.  If true this is yet …

New papers on microbiology of the built environment, July 31, 2016

Microbes in the air High throughput genomic sequencing of bioaerosols in broiler chicken production facilities – Kate M. O’Brien – Microbial Biotechnology (OA) Chronic inhalation exposure to agricultural dust promotes the development of chronic respiratory diseases among poultry workers. Poultry dust is composed of dander, chicken feed, litter bedding and microbes. However, the microbial composition …

Deceptive lead testing, water utilities and the EPA vs. citizen science 

Just got done reading this article from the Guardian and it is distressing Guardian analysis reveals millions of customers were asked to used testing method condemned by the EPA which may flush out detectable lead content Source: Water utilities serving American cities use tests that downplay contamination | Environment | The Guardian by Jessica Glenza and Oliver Milman. The …