q2d2: A public QIIME 2 prototype

Posted on January 8, 2016September 4, 2017

This month the QIIME development group is starting the transition from prototyping to developing QIIME 2. To mark this transition and to follow up on my recent blog post, Toward QIIME 2, I put together a demo video that illustrates the end point of one of our QIIME 2 prototypes, q2d2, which you can find …

IPython notebook for basic microbial ecology analysis using QIIME

By Jenna Lang Posted in Bioinformatics

Posted on February 20, 2015February 23, 2015

I’ve gone public with my default QIIME workflow. I hope this will be helpful to some, and I encourage anyone with QIIME skills to read through it to see if I’m missing anything. Brief blog post about it is here: http://jennomics.com/2015/02/20/ipython-notebook-for-basic-microbial-ecology-analysis-using-qiime/ and the notebook is hosted here: jennomics.github.io/QIIMEbyJennomics/