Report on 2020 Spacecraft-Associated Genome Analysis (SAGAn) workshop at NASA JPL

So this last week, we ran a workshop on bacterial genomics at the Jet Propulsion Laboratory (JPL).  Who is “we”?  An amazing collaboration across several institutions.  The whole thing was initiated by Dr. Parag Vaishampayan (NASA-JPL), who contacted myself (UC Davis), Dr. Elinne Becket (Cal State San Marcos), and Dr. Kenisha Johnson (Alabama A&M) about …

Journal Club: “Pre- and post-sequencing recommendations for functional annotation of human fecal metagenomes”

This is a pre-print that just came out from several UC Davis colleagues.  I actually think the title is a bit misleading because these recommendations are a lot broader than just human fecal metagenomes.  Definitely worth a read! Abstract below: Background Shotgun metagenomes are often assembled prior to annotation of genes which biases the functional …

Job posting for Nanopore bioinformatics at NASA

Just got pointed to this really awesome sounding job posting at NASA.   Text below: Job Description Bioinformatics Scientist – 1079705 The Microbiology Laboratory at the NASA Johnson Space Center is seeking a highly motivated individual to fill a bioinformatics research position. The goal of the laboratory is to mitigate microbial risk to crew health, …

Job posting: Bioinformatician/Statistician- (BioStatistician) (Gladstone Institute)

Posting below:   Responsibilities We are seeking a talented Bioinformatician or Statistician to join the dynamic bioinformatics team here at Gladstone Institutes.  You will be providing bioinformatics and computational support to the world-class biomedical research conducted in labs at Gladstone Institutes, UCSF, and beyond. Working closely with experimental scientists, you will lead end-to-end studies from …

Microbiome Bioinformatics Postdoctoral Scientist, Colorado State University

The Metcalf lab at Colorado State University is seeking a microbiome bioinformatics postdoctoral scientist. The scientist will analyze multi-omics data sets, including but not limited to: amplicon sequencing data, shotgun metagenomics data, and metabolomics data. Min. reqs. include: Ph.D. in bioinformatics, ecology, microbiology or similar field. Proficient in coding languages (Python preferred). Demonstrated knowledge of …

Three postdoctoral positions in microbial ecology and plant-microbe interactions at U. Wyoming

Three postdoctoral positions in microbial ecology and plant-microbe interactions Position descriptions available below and on the UW job site (positions 9465, 9480, 9466) at https://tinyurl.com/yd3qoag3 Post Doctoral Research Associate in Microbiology and Microbial Ecology (position 9465): The Ward research group at the University of Wyoming is seeking a postdoctoral researcher in microbiology and microbial ecology. Minimum requirements include a Ph.D. in a relevant discipline, and experience in …

Nice title, nice paper: Microbiome Datasets Are Compositional: And This Is Not Optional 

This seems like it is a must read for anyone working on microbiomes: Frontiers | Microbiome Datasets Are Compositional: And This Is Not Optional | Microbiology Gloor GB, Macklaim JM, Pawlowsky-Glahn V and Egozcue JJ (2017) Microbiome Datasets Are Compositional: And This Is Not Optional. Front. Microbiol. 8:2224. doi: 10.3389/fmicb.2017.02224 Summary from the paper: Datasets …

Postdoctoral positions in engineering the microbiome – Cornell University

The Brito Lab at Cornell University in Ithaca, NY works in the area of systems biology of the human microbiome. We are looking for talented postdocs to fill two open positions for postdoctoral researchers interested in investigating mechanistic linkages between microbes and human health outcomes. Postdoctoral candidates can have an experimental or computational background, or both. One of …