home Scholarly Literature (Journals, Books, Reports) New papers on microbiology of the built environment, November 30, 2015

New papers on microbiology of the built environment, November 30, 2015

A selection of new papers of interest for this readership, collected from my blog MicrobiomeDigest:

Microbes in the air

Evaluation of the potential for virus dispersal during hand drying: a comparison of three methods – Patrick T. Kimmitt, Keith F. Redway – Journal of Applied Microbiology ($$)

Screen Shot 2015-11-30 at 12.25.00 PMAims: To use a MS2 bacteriophage model to compare three hand-drying methods, paper towels (PT), a warm air dryer (WAD) and a jet air dryer (JAD) (Note EB: a Dyson), for their potential to disperse viruses and contaminate the immediate environment during use. Participants washed their gloved hands with a suspension of MS2 bacteriophage and hands were dried with one of the three hand-drying devices. The quantity of MS2 present in the areas around each device was determined using a plaque assay. Samples were collected from plates containing the indicator strain, placed at varying heights and distances and also from the air. (…) Use of the JAD lead to significantly greater and further dispersal of MS2 bacteriophage from artificially contaminated hands when compared to the WAD and PT.

Characterizing the Bacterial Communities in Retail Stores in the United States – A Hoisington, J. P Maestre, K. A Kinney, J. A Siegel – Indoor Air ($$)

Screen Shot 2015-11-30 at 1.36.08 PMIn the present study, HVAC filter dust samples in 13 US retail stores were collected and analyzed via pyrosequencing to characterize the indoor bacterial communities and to explore potential relationships between these communities and building and environmental parameters. Although retail stores contained a diverse bacterial community of 788 unique genera, over half of the nearly 118K sequences were attributed to the Proteobacteria phylum. Streptophyta, Bacillus, Corynebacterium, Pseudomonas, and Acinetobacter were the most prevalent genera detected. The recovered indoor airborne microbial community was statistically associated with both human oral and skin microbiota, indicating occupants are important contributors, despite a relatively low occupant density per unit volume in retail stores. (…)

Microbes in food processing

Microbial dynamics in mixed culture biofilms of bacteria surviving sanitation of conveyor belts in salmon processing plants – Solveig Langsrud et al. – Journal of Applied Microbiology ($$)

Screen Shot 2015-11-30 at 1.39.34 PMThe microbiota surviving sanitation of salmon processing conveyor belts was identified and its growth dynamics further investigated in a model mimicking processing surfaces in such plants. (…) A diverse microbiota dominated by gram-negative bacteria was isolated after regular sanitation in three salmon processing plants. (…) High-throughput sequencing showed that L. monocytogenes represented 0.1 – 0.01% of the biofilm population and that Pseudomonas spp dominated. Interestingly, both Brochothrix sp. and a Pseudomonas sp. dominated in the surrounding suspension.

Microbes in drinking water

Extracellular Lipase and Protease Production from a Model Drinking Water Bacterial Community Is Functionally Robust to Absence of Individual Members – Graham G. Willsey – PLOS ONE (OA)

Screen Shot 2015-11-30 at 1.43.38 PMOur goal was to investigate the impact of individual community member absence on the resulting community production of exoenzymes (extracellular enzymes) involved in lipid and protein hydrolysis. Our model community contained nine bacteria isolated from the potable water system of the International Space Station. Bacteria were grown in static conditions individually, all together, or in all combinations of eight species and exoproduct production was measured by colorimetric or fluorometric reagents to assess short chain and long chain lipases, choline-specific phospholipases C, and proteases. (…) We conclude that in this simplified model of a drinking water bacterial community, community structure imposes constraints on production and/or secretion of exoenzymes to generate a level appropriate to exploit a given nutrient environment.

Microbes and mining

Review: New insights into the genetic and metabolic diversity of thiocyanate-degrading microbial consortia – Mathew P. Watts – Applied Microbiology and Biotechnology ($$)

Screen Shot 2015-11-30 at 1.47.36 PMThiocyanate is a common contaminant of the gold mining and coal coking industries for which biological degradation generally represents the most viable approach to remediation. Recent studies of thiocyanate-degrading bioreactor systems have revealed new information on the structure and metabolic activity of thiocyanate-degrading microbial consortia. (…) High throughput sequencing, DNA fingerprinting and targeted gene amplification have now elucidated the genetic and metabolic diversity of these complex microbial consortia. (…) Here we review these rapidly advancing studies and synthesize a conceptual model to inform new biotechnologies for thiocyanate remediation.

Diversity and Distribution of Arsenic-Related Genes Along a Pollution Gradient in a River Affected by Acid Mine Drainage – Angélique Desoeuvre, Corinne Casiot, Marina Héry – Microbial Ecology ($$)

Screen Shot 2015-11-30 at 1.49.31 PMSome microorganisms have the capacity to interact with arsenic through resistance or metabolic processes. Their activities contribute to the fate of arsenic in contaminated ecosystems. To investigate the genetic potential involved in these interactions in a zone of confluence between a pristine river and an arsenic-rich acid mine drainage, we explored the diversity of marker genes for arsenic resistance (arsB, acr3.1, acr3.2), methylation (arsM), and respiration (arrA) in waters characterized by contrasted concentrations of metallic elements (including arsenic) and pH. (…) This is the first report of the impact of an acid mine drainage on the diversity and distribution of arsenic (As)-related genes in river waters. The fate of arsenic in this ecosystem is probably under the influence of the abundance and activity of specific microbial populations involved in different As biotransformations.

Microbes and waste treatment

Seasonal variations of microbial community in a full scale oil field produced water treatment plant – Q. Xie et al. – Global Journal of Environmental Science and Management (OA)

Screen Shot 2015-11-30 at 1.52.36 PMThis study investigated the microbial community in a full scale anaerobic baffled reactor and sequencing batch reactor system for oil-produced water treatment in summer and winter. The community structures of fungi and bacteria were analyzed through polymerase chain reaction—denaturing gradient gel electrophoresis and Illumina high-throughput sequencing, respectively. (…) The fungal communities in anaerobic baffled reactor and sequencing batch reactor were shaped by seasons and treatment units, while there was no correlation between abundance of fungi and chemical oxygen demand removal rates. (…) Although microbial community significantly varied in the three parallel sulfide reducing bacteria, the performance of these bioreactors had no significant difference between summer and winter.


Elisabeth Bik

After receiving my PhD at Utrecht University in The Netherlands, I worked at the Dutch National Institute for Health and the St. Antonius Hospital in Nieuwegein. In 2001, I joined the Department of Microbiology and Immunology at Stanford, where I have worked on the characterization of the microbiome of human oral, gastric, and intestinal samples, as well as samples from marine mammals. Since November 2016, I am the new Science Editor at uBiome, a microbiome genomics company enabling citizen science. But you might also find me working on the detection of science misconduct, at my blog Microbiome Digest , an almost daily compilation of scientific papers in the rapidly growing microbiome field, on Twitter at @MicrobiomDigest.

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