Back in September we posted a call for help with our “comprehensive” database of publications resulting from the Alfred P. Sloan Foundation program in the Microbiology of the Built Environment. We’ve tried database scanning, begging people for help, public posting, manually digging through Google Scholar, grant reports, etc. Our hope is to use this collection of papers to analyze author co-occurrence networks, measure shifts in collaboration across fields etc. Not to mention standing as a record of the accomplishments of the program. We have decided to only collect publications through the end of 2017… though of course many awesome papers are still coming out of the program.
If you ever published work resulting from Sloan funding could you please check this list to make sure all appropriate publications for yourself are listed? In particular any papers published between August and December of 2017 or anyone who didn’t get a chance to check the list last time. Thanks for any help!
Abarenkov, K., Adams, R.I., Laszlo, I., Agan, A., Ambrosio, E., Antonelli, A., Bahram, M., Bengtsson-Palme, J., Bok, G., Cangren, P., et al. (2016). Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden). MycoKeys 16, 1–15.
Adams, R.I., Amend, A.S., Taylor, J.W., and Bruns, T.D. (2013a). A Unique Signal Distorts the Perception of Species Richness and Composition in High-Throughput Sequencing Surveys of Microbial Communities: a Case Study of Fungi in Indoor Dust. Microb Ecol 66, 735–741.
Adams, R.I., Miletto, M., Taylor, J.W., and Bruns, T.D. (2013b). Dispersal in microbes: fungi in indoor air are dominated by outdoor air and show dispersal limitation at short distances. ISME J 7, 1262–1273.
Adams, R.I., Miletto, M., Taylor, J.W., and Bruns, T.D. (2013c). The Diversity and Distribution of Fungi on Residential Surfaces. PLoS One 8.
Adams, R.I., Miletto, M., Lindow, S.E., Taylor, J.W., and Bruns, T.D. (2014). Airborne Bacterial Communities in Residences: Similarities and Differences with Fungi. PLoS One 9.
Adams, R.I., Bhangar, S., Pasut, W., Arens, E.A., Taylor, J.W., Lindow, S.E., Nazaroff, W.W., and Bruns, T.D. (2015a). Chamber Bioaerosol Study: Outdoor Air and Human Occupants as Sources of Indoor Airborne Microbes. PLoS One 10.
Adams, R.I., Bateman, A.C., Bik, H.M., and Meadow, J.F. (2015b). Microbiota of the indoor environment: a meta-analysis. Microbiome 3.
Adams, R.I., Tian, Y., Taylor, J.W., Bruns, T.D., Hyvärinen, A., and Täubel, M. (2015c). Passive dust collectors for assessing airborne microbial material. Microbiome 3.
Adams, R.I., Bhangar, S., Dannemiller, K.C., Eisen, J.A., Fierer, N., Gilbert, J.A., Green, J.L., Marr, L.C., Miller, S.L., Siegel, J.A., et al. (2016). Ten questions concerning the microbiomes of buildings. Building and Environment 109, 224–234.
Ahrendt, S.R., Medina, E.M., Chang, C.-E.A., and Stajich, J.E. (2017). Exploring the binding properties and structural stability of an opsin in the chytrid Spizellomyces punctatus using comparative and molecular modeling. PeerJ 5, e3206.
Alcaïs, A., Quintana-Murci, L., Thaler, D.S., Schurr, E., Abel, L., and Casanova, J.-L. (2010). Life-threatening infectious diseases of childhood: single-gene inborn errors of immunity?: Genetic architecture of infectious diseases. Annals of the New York Academy of Sciences 1214, 18–33.
Al-Hatmi, A.M.S., Van Den Ende, A.H.G.G., Stielow, J.B., Van Diepeningen, A.D., Seifert, K.A., McCormick, W., Assabgui, R., Gräfenhan, T., De Hoog, G.S., and Levesque, C.A. (2016). Evaluation of two novel barcodes for species recognition of opportunistic pathogens in Fusarium. Fungal Biol 120, 231–245.
Alivisatos, A.P., Blaser, M.J., Brodie, E.L., Chun, M., Dangl, J.L., Donohue, T.J., Dorrestein, P.C., Gilbert, J.A., Green, J.L., Jansson, J.K., et al. (2015). A unified initiative to harness Earth’s microbiomes. Science 350, 507–508.
Amend, A.S., Seifert, K.A., Samson, R., and Bruns, T.D. (2010a). Indoor fungal composition is geographically patterned and more diverse in temperate zones than in the tropics. Proc Natl Acad Sci U S A 107, 13748–13753.
Amend, A.S., Seifert, K.A., and Bruns, T.D. (2010b). Quantifying microbial communities with 454 pyrosequencing: does read abundance count? Mol. Ecol. 19, 5555–5565.
Amir, A., McDonald, D., Navas-Molina, J.A., Kopylova, E., Morton, J.T., Zech Xu, Z., Kightley, E.P., Thompson, L.R., Hyde, E.R., Gonzalez, A., et al. (2017). Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns. mSystems 2, e00191-16.
Bálint, M., Bahram, M., Eren, A.M., Faust, K., Fuhrman, J.A., Lindahl, B., O’Hara, R.B., Öpik, M., Sogin, M.L., Unterseher, M., et al. (2016). Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes. FEMS Microbiol. Rev.
Barberán, A., Ladau, J., Leff, J.W., Pollard, K.S., Menninger, H.L., Dunn, R.R., and Fierer, N. (2015a). Continental-scale distributions of dust-associated bacteria and fungi. Proc Natl Acad Sci U S A 112, 5756–5761.
Barberán, A., Dunn, R.R., Reich, B.J., Pacifici, K., Laber, E.B., Menninger, H.L., Morton, J.M., Henley, J.B., Leff, J.W., Miller, S.L., et al. (2015b). The ecology of microscopic life in household dust. Proc. Biol. Sci. 282.
Baron, J.L., Vikram, A., Duda, S., Stout, J.E., and Bibby, K. (2014). Shift in the Microbial Ecology of a Hospital Hot Water System following the Introduction of an On-Site Monochloramine Disinfection System. PLoS One 9.
Baron, J.L., Harris, J.K., Holinger, E.P., Duda, S., Stevens, M.J., Robertson, C.E., Ross, K.A., Pace, N.R., and Stout, J.E. (2015). Effect of monochloramine treatment on the microbial ecology of Legionella and associated bacterial populations in a hospital hot water system. Syst. Appl. Microbiol. 38, 198–205.
Bates, S.T., Ahrendt, S., Bik, H.M., Bruns, T.D., Caporaso, J.G., Cole, J., Dwan, M., Fierer, N., Gu, D., Houston, S., et al. (2013). Meeting Report: Fungal ITS Workshop (October 2012). Stand Genomic Sci 8, 118–123.
Bennun, A. (1975). Hypothesis on the role of liganded states of proteins in energy transducing systems. BioSystems 7, 230–244.
Benoit, J.B., Adelman, Z.N., Reinhardt, K., Dolan, A., Poelchau, M., Jennings, E.C., Szuter, E.M., Hagan, R.W., Gujar, H., Shukla, J.N., et al. (2016). Unique features of a global human ectoparasite identified through sequencing of the bed bug genome. Nat Commun 7.
Betts, M.N., Jospin, G., Eisen, J.A., and Coil, D.A. (2015). Draft Genome Sequence of Planomicrobium glaciei UCD-HAM (Phylum Firmicutes ). Genome Announcements 3, e01209-15.
Bhangar, S., Huffman, J.A., and Nazaroff, W.W. (2014). Size-resolved fluorescent biological aerosol particle concentrations and occupant emissions in a university classroom. Indoor Air 24, 604–617.
Bhangar, S., Adams, R.I., Pasut, W., Huffman, J.A., Arens, E.A., Taylor, J.W., Bruns, T.D., and Nazaroff, W.W. (2016a). Chamber bioaerosol study: human emissions of size-resolved fluorescent biological aerosol particles. Indoor Air 26, 193–206.
Bhangar, S., Brooks, B., Firek, B., Licina, D., Tang, X., Morowitz, M.J., Banfield, J.F., and Nazaroff, W.W. (2016b). Pilot study of sources and concentrations of size-resolved airborne particles in a neonatal intensive care unit. Building and Environment 106, 10–19.
Bik, H.M., Porazinska, D.L., Creer, S., Caporaso, J.G., Knight, R., and Thomas, W.K. (2012). Sequencing our way towards understanding global eukaryotic biodiversity. Trends Ecol Evol 27, 233–243.
Bik, H.M., Coil, D.A., and Eisen, J.A. (2014). microBEnet: Lessons Learned from Building an Interdisciplinary Scientific Community in the Online Sphere. PLoS Biol 12.
Bland, R.D., Clarke, T.L., and Harden, L.B. (1976). Rapid infusion of sodium bicarbonate and albumin into high-risk premature infants soon after birth: a controlled, prospective trial. Am. J. Obstet. Gynecol. 124, 263–267.
Blaser, M.J., Cardon, Z.G., Cho, M.K., Dangl, J.L., Donohue, T.J., Green, J.L., Knight, R., Maxon, M.E., Northen, T.R., Pollard, K.S., et al. (2016). Toward a Predictive Understanding of Earth’s Microbiomes to Address 21st Century Challenges. mBio 7.
Bokulich, N.A., Lewis, Z.T., Boundy-Mills, K., and Mills, D.A. (2016a). A new perspective on microbial landscapes within food production. Curr Opin Biotechnol 37, 182–189.
Bokulich, N.A., Rideout, J.R., Mercurio, W.G., Shiffer, A., Wolfe, B., Maurice, C.F., Dutton, R.J., Turnbaugh, P.J., Knight, R., and Caporaso, J.G. (2016b). mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking. mSystems 1.
Borrowman, C.K., Zhou, S., Burrow, T.E., and Abbatt, J.P.D. (2015). Formation of environmentally persistent free radicals from the heterogeneous reaction of ozone and polycyclic aromatic compounds. Phys. Chem. Chem. Phys. 18, 205–212.
Bose, K.S., and Sarma, R.H. (1975). Delineation of the intimate details of the backbone conformation of pyridine nucleotide coenzymes in aqueous solution. Biochem. Biophys. Res. Commun. 66, 1173–1179.
Brooks, B., Firek, B.A., Miller, C.S., Sharon, I., Thomas, B.C., Baker, R., Morowitz, M.J., and Banfield, J.F. (2014). Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants. Microbiome 2, 1.
Brooks, B., Olm, M.R., Firek, B.A., Baker, R., Thomas, B.C., Morowitz, M.J., and Banfield, J.F. (2017). Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome. Nature Communications 8.
Brown, G.Z., Kline, J., Mhuireach, G., Northcutt, D., and Stenson, J. (2016). Making microbiology of the built environment relevant to design. Microbiome 4.
Buse, H.Y., Ji, P., Gomez-Alvarez, V., Pruden, A., Edwards, M.A., and Ashbolt, N.J. (2016). Effect of temperature and colonization of Legionella pneumophila and Vermamoeba vermiformis on bacterial community composition of copper drinking water biofilms. Microbial Biotechnology.
Caporaso, J.G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F.D., Costello, E.K., Fierer, N., Peña, A.G., Goodrich, J.K., Gordon, J.I., et al. (2010). QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335–336.
Caverly, L.J., Carmody, L.A., Haig, S.-J., Kotlarz, N., Kalikin, L.M., Raskin, L., and LiPuma, J.J. (2016). Culture-Independent Identification of Nontuberculous Mycobacteria in Cystic Fibrosis Respiratory Samples. PLoS One 11.
Chase, J., Fouquier, J., Zare, M., Sonderegger, D.L., Knight, R., Kelley, S.T., Siegel, J., and Caporaso, J.G. (2016a). Geography and Location Are the Primary Drivers of Office Microbiome Composition. mSystems 1, e00022-16.
Chase, J.H., Bolyen, E., Rideout, J.R., and Caporaso, J.G. (2016b). cual-id: Globally Unique, Correctable, and Human-Friendly Sample Identifiers for Comparative Omics Studies. mSystems 1.
Chen, A.J., Frisvad, J.C., Sun, B.D., Varga, J., Kocsub?, S., Dijksterhuis, J., Kim, D.H., Hong, S.-B., Houbraken, J., and Samson, R.A. (2016a). Aspergillus section Nidulantes (formerly Emericella): Polyphasic taxonomy, chemistry and biology. Studies in Mycology 84, 1–118.
Chen, A.J., Sun, B.D., Houbraken, J., Frisvad, J.C., Yilmaz, N., Zhou, Y.G., and Samson, R.A. (2016b). New Talaromyces species from indoor environments in China. Studies in Mycology 84, 119–144.
Chen, A.J., Hubka, V., Frisvad, J.C., Visagie, C.M., Houbraken, J., Meijer, M., Varga, J., Demirel, R., Jurjević, Ž., Kubátová, A., et al. (2017). Polyphasic taxonomy of Aspergillus section Aspergillus (formerly Eurotium), and its occurrence in indoor environments and food. Studies in Mycology 88, 37–135.
Chitsaz, H., Yee-Greenbaum, J.L., Tesler, G., Lombardo, M.-J., Dupont, C.L., Badger, J.H., Novotny, M., Rusch, D.B., Fraser, L.J., Gormley, N.A., et al. (2011). Efficient de novo assembly of single-cell bacterial genomes from short-read data sets. Nature Biotechnology 29, 915–921.
Coil, D.A., and Eisen, J.A. (2015). Draft Genome Sequence of Porphyrobacter mercurialis (sp. nov.) Strain Coronado. Genome Announcements 3, e00856-15.
Coil, D.A., Doctor, J.I., Lang, J.M., Darling, A.E., and Eisen, J.A. (2013). Draft Genome Sequence of Kocuria sp. Strain UCD-OTCP (Phylum Actinobacteria). Genome Announcements 1, e00172-13-e00172-13.
Coil, D.A., Flanagan, J.C., Stump, A., Alexiev, A., Lang, J.M., and Eisen, J.A. (2015a). Porphyrobacter mercurialis sp. nov., isolated from a stadium seat and emended description of the genus Porphyrobacter. PeerJ 3, e1400.
Coil, D.A., Benardini, J.N., and Eisen, J.A. (2015b). Draft Genome Sequence of Bacillus safensis JPL-MERTA-8-2, Isolated from a Mars-Bound Spacecraft. Genome Announcements 3, e01360-15.
Coil, D.A., Neches, R.Y., Lang, J.M., Brown, W.E., Severance, M., Cavalier, D., and Eisen, J.A. (2016). Growth of 48 built environment bacterial isolates on board the International Space Station (ISS). PeerJ 4, e1842.
Collins, R.A., Stajich, J.E., Field, D.J., Olive, J.E., and DeAbreu, D.M. (2015). The low information content of Neurospora splicing signals: implications for RNA splicing and intron origin. RNA 21, 997–1004.
Committee on Microbiomes of the Built Environment: From Research to Application, Board on Life Sciences, Board on Environmental Studies and Toxicology, Division on Earth and Life Studies, Health and Medicine Division, Board on Infrastructure and the Constructed Environment, Division on Engineering and Physical Sciences, National Academy of Engineering, and National Academies of Sciences, Engineering, and Medicine (2017). Microbiomes of the Built Environment: A Research Agenda for Indoor Microbiology, Human Health, and Buildings (Washington, D.C.: National Academies Press).
Corsi, R.L., Kinney, K.A., and Levin, H. (2012). Microbiomes of built environments: 2011 symposium highlights and workgroup recommendations. Indoor Air 22, 171–172.
Craine, J.M., Barberán, A., Lynch, R.C., Menninger, H.L., Dunn, R.R., and Fierer, N. (2017). Molecular analysis of environmental plant DNA in house dust across the United States. Aerobiologia 33, 71–86.
Crous, P.W., Wingfield, M.J., Burgess, T.I., Hardy, G.E.S.J., Crane, C., Barrett, S., Cano-Lira, J.F., Leroux, J.J., Thangavel, R., Guarro, J., et al. (2016). Fungal Planet description sheets: 469?557. Persoonia – Molecular Phylogeny and Evolution of Fungi 37, 218–403.
Dahlhausen, K., Krebs, B.L., Watters, J.V., and Ganz, H.H. (2016). Crowdfunding Campaigns Help Researchers Launch Projects and Generate Outreach. Journal of Microbiology & Biology Education 17, 32–37.
Dahms, P.A., Martin, A.L., Ganz, H.H., Eisen, J.A., and Coil, D.A. (2017). Draft Genome Sequence of Propionibacterium avidum Strain UCD-PD2 Isolated from a Feline Anal Sac. Genome Announcements 5, e00034-17.
Dai, D., Prussin, A.J., Marr, L.C., Vikesland, P.J., Edwards, M.A., and Pruden, A. (2017). Factors Shaping the Human Exposome in the Built Environment: Opportunities for Engineering Control. Environmental Science & Technology 51, 7759–7774.
Dannemiller, K.C., Lang-Yona, N., Yamamoto, N., Rudich, Y., and Peccia, J. (2014a). Combining real-time PCR and next-generation DNA sequencing to provide quantitative comparisons of fungal aerosol populations. Atmospheric Environment 84, 113–121.
Dannemiller, K.C., Reeves, D., Bibby, K., Yamamoto, N., and Peccia, J. (2014b). Fungal high-throughput taxonomic identification tool for use with next-generation sequencing (FHiTINGS). J. Basic Microbiol. 54, 315–321.
Dannemiller, K.C., Mendell, M.J., Macher, J.M., Kumagai, K., Bradman, A., Holland, N., Harley, K., Eskenazi, B., and Peccia, J. (2014c). Next-generation DNA sequencing reveals that low fungal diversity in house dust is associated with childhood asthma development. Indoor Air 24, 236–247.
Dannemiller, K.C., Weschler, C.J., and Peccia, J. (2016a). Fungal and bacterial growth in floor dust at elevated relative humidity levels. Indoor Air.
Dannemiller, K.C., Gent, J.F., Leaderer, B.P., and Peccia, J. (2016b). Indoor microbial communities: Influence on asthma severity in atopic and nonatopic children. J. Allergy Clin. Immunol. 138, 76–83.e1.
Dannemiller, K.C., Gent, J.F., Leaderer, B.P., and Peccia, J. (2016c). Influence of housing characteristics on bacterial and fungal communities in homes of asthmatic children. Indoor Air 26, 179–192.
Davis, J.C.C., Totten, S.M., Huang, J.O., Nagshbandi, S., Kirmiz, N., Garrido, D.A., Lewis, Z.T., Wu, L.D., Smilowitz, J.T., German, J.B., et al. (2016). Identification of Oligosaccharides in Feces of Breast-fed Infants and Their Correlation with the Gut Microbial Community. Mol. Cell Proteomics 15, 2987–3002.
Davis, J.C.C., Lewis, Z.T., Krishnan, S., Bernstein, R.M., Moore, S.E., Prentice, A.M., Mills, D.A., Lebrilla, C.B., and Zivkovic, A.M. (2017). Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides and Infant Gut Microbiota. Scientific Reports 7, 40466.
De Filippis, F., Genovese, A., Ferranti, P., Gilbert, J.A., and Ercolini, D. (2016). Metatranscriptomics reveals temperature-driven functional changes in microbiome impacting cheese maturation rate. Sci Rep 6.
De Vries, D.R., Martin, A.L., Ganz, H.H., Eisen, J.A., and Coil, D.A. (2016). Draft Genome Sequence of Enterococcus faecalis Strain UCD-PD3. Genome Announcements 4, e01386-16.
Dedesko, S., and Siegel, J.A. (2015). Moisture parameters and fungal communities associated with gypsum drywall in buildings. Microbiome 3.
Dedesko, S., Stephens, B., Gilbert, J.A., and Siegel, J.A. (2015). Methods to assess human occupancy and occupant activity in hospital patient rooms. Building and Environment 90, 136–145.
DeVries, Z.C., Mick, R., and Schal, C. (2016). Feel the heat: Activation, orientation, and feeding responses of bed bugs to targets at different temperatures. J. Exp. Biol.
Diep, A.L., Lang, J.M., Darling, A.E., Eisen, J.A., and Coil, D.A. (2013). Draft Genome Sequence of Dietzia sp. Strain UCD-THP (Phylum Actinobacteria). Genome Announcements 1, e00197-13-e00197-13.
Dominguez-Bello, M.G. (2016). A Microbial Anthropologist in the Jungle. Cell 167, 588–594.
Dominguez-Bello, M.G., Peterson, D., Noya-Alarcon, O., Bevilacqua, M., Rojas, N., Rodríguez, R., Pinto, S.A., Baallow, R., and Caballero-Arias, H. (2016). Ethics of exploring the microbiome of native peoples. Nature Microbiology 1, nmicrobiol201697.
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Dunitz, M.I., Lang, J.M., Jospin, G., Darling, A.E., Eisen, J.A., and Coil, D.A. (2015). Swabs to genomes: a comprehensive workflow. PeerJ 3, e960.
Dunn, R.R., Fierer, N., Henley, J.B., Leff, J.W., and Menninger, H.L. (2013). Home Life: Factors Structuring the Bacterial Diversity Found within and between Homes. PLoS One 8.
Eisen, J. (2017). microBEnet: Perspectives on trying to nurture a growing MoBE field.
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Emerson, J.B., Keady, P.B., Brewer, T.E., Clements, N., Morgan, E.E., Awerbuch, J., Miller, S.L., and Fierer, N. (2015). Impacts of flood damage on airborne bacteria and fungi in homes after the 2013 Colorado Front Range flood. Environ. Sci. Technol. 49, 2675–2684.
Emerson, J.B., Keady, P.B., Clements, N., Morgan, E.E., Awerbuch, J., Miller, S.L., and Fierer, N. (2017a). High temporal variability in airborne bacterial diversity and abundance inside single-family residences. Indoor Air 27, 576–586.
Emerson, J.B., Adams, R.I., Román, C.M.B., Brooks, B., Coil, D.A., Dahlhausen, K., Ganz, H.H., Hartmann, E.M., Hsu, T., Justice, N.B., et al. (2017b). Schrödinger’s microbes: Tools for distinguishing the living from the dead in microbial ecosystems. Microbiome 5.
Eren, A.M., Vineis, J.H., Morrison, H.G., and Sogin, M.L. (2013a). A Filtering Method to Generate High Quality Short Reads Using Illumina Paired-End Technology. PLoS One 8.
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Eren, A.M., Morrison, H.G., Lescault, P.J., Reveillaud, J., Vineis, J.H., and Sogin, M.L. (2015). Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences. ISME J 9, 968–979.
Falkinham, J.O., Pruden, A., and Edwards, M. (2015). Opportunistic Premise Plumbing Pathogens: Increasingly Important Pathogens in Drinking Water. Pathogens 4, 373–386.
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Flanagan, J.C., Lang, J.M., Darling, A.E., Eisen, J.A., and Coil, D.A. (2013). Draft Genome Sequence of Curtobacterium flaccumfaciens Strain UCD-AKU (Phylum Actinobacteria). Genome Announcements 1, e00244-13-e00244-13.
Flores, G.E., Bates, S.T., Knights, D., Lauber, C.L., Stombaugh, J., Knight, R., and Fierer, N. (2011). Microbial Biogeography of Public Restroom Surfaces. PLoS One 6.
Flores, G.E., Bates, S.T., Caporaso, J.G., Lauber, C.L., Leff, J.W., Knight, R., and Fierer, N. (2013). Diversity, distribution and sources of bacteria in residential kitchens. Environ. Microbiol. 15, 588–596.
Fouquier, J., Schwartz, T., and Kelley, S.T. (2015). Rapid assemblage of diverse environmental fungal communities on public restroom floors. Indoor Air.
Fouquier, J., Rideout, J.R., Bolyen, E., Chase, J., Shiffer, A., McDonald, D., Knight, R., Caporaso, J.G., and Kelley, S.T. (2016). ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses. Microbiome 4.
Fox, K., Fox, A., Elssner, T., Feigley, C., and Salzberg, D. (2010). MALDI-TOF mass spectrometry speciation of staphylococci and their discrimination from micrococci isolated from indoor air of schoolrooms. J Environ Monit 12, 917–923.
Fox, K., Fox, A., Rose, J., and Walla, M. (2011). Speciation of coagulase negative staphylococci, isolated from indoor air, using SDS PAGE gel bands of expressed proteins followed by MALDI TOF MS and MALDI TOF-TOF MS-MS analysis of tryptic peptides. J. Microbiol. Methods 84, 243–250.
Fujimura, K.E., Demoor, T., Rauch, M., Faruqi, A.A., Jang, S., Johnson, C.C., Boushey, H.A., Zoratti, E., Ownby, D., Lukacs, N.W., et al. (2014). House dust exposure mediates gut microbiome Lactobacillus enrichment and airway immune defense against allergens and virus infection. Proceedings of the National Academy of Sciences 111, 805–810.
Fujimura, K.E., Sitarik, A.R., Havstad, S., Lin, D.L., Levan, S., Fadrosh, D., Panzer, A.R., LaMere, B., Rackaityte, E., Lukacs, N.W., et al. (2016). Neonatal gut microbiota associates with childhood multisensitized atopy and T cell differentiation. Nature Medicine 22, 1187–1191.
Ganz, H.H., Doroud, L., Firl, A.J., Hird, S.M., Eisen, J.A., and Boyce, W.M. (2017). Community-Level Differences in the Microbiome of Healthy Wild Mallards and Those Infected by Influenza A Viruses. mSystems 2, e00188-16.
Garbarino, J., and Mason, C.E. (2016). The Power of Engaging Citizen Scientists for Scientific Progress. J Microbiol Biol Educ 17, 7–12.
Garner, E., Zhu, N., Strom, L., Edwards, M., and Pruden, A. (2016). A human exposome framework for guiding risk management and holistic assessment of recycled water quality. Environ. Sci.: Water Res. Technol. 2, 580–598.
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(2016a). Erratum to: The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium Inaugural Meeting Report. Microbiome 4, 45.
(2016b). The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report. Microbiome 4, 24.
The 2015 New York City Legionnaires’ Disease Outbreak: A Ca… : Journal of Public Health Management and Practice.
Hull NM, Holinger EP, Ross KA, Robertson CE, Harris JK, Stevens MJ, and Pace NR (2017). Longitudinal and Source-to-Tap New Orleans, LA, USA Drinking Water Microbiology. ES&T 51(8):4220-4229.
Thanks Natalie!
What a remarkable list! Here is the full citation for two articles already on the list:
1) Vandegrift, R., Bateman, A.C., Siemens, K.N., Nguyen, M., Wilson, H.E., Green, J.L., Van Den Wymelenberg, K. G., Hickey, R. J. 2017. Cleanliness in context: reconciling hygiene with a modern microbial perspective. Microbiome. 5:76.
2) Mhuireach, G., Johnson, B.R., Altrichter, A.E., Ladau, J., Meadow, J.F., Pollard, K.S., Green, J.L. Urban greenness influences airborne bacterial community composition. 2016. Science of the Total Environment 571:680-687.
Thanks!