Postdoc at UC Davis in metagenomics bioinformatics

Job posting from here at UC Davis: The laboratories of Danielle Lemay (USDA Western Human Nutrition Research Center) and David Mills (UC Davis Food Science) seek a motivated postdoctoral scholar for a one year project. The goal of the project is to determine how dietary intake influences antimicrobial resistance in fecal metagenomes of healthy adults. The …

New wastewater anammox project

So our lab appears to be digging deeper and deeper into the world of wastewater treatment, especially the process of removing ammonia from wastewater in the final steps.  I’ve posted before about our sample collection from a pilot wastewater treatment facility.   We’ve been sequencing those samples like crazy… we’ve thrown Nanopore, Illumina, and PacBio data …

Job posting for Nanopore bioinformatics at NASA

Just got pointed to this really awesome sounding job posting at NASA.   Text below: Job Description Bioinformatics Scientist – 1079705 The Microbiology Laboratory at the NASA Johnson Space Center is seeking a highly motivated individual to fill a bioinformatics research position. The goal of the laboratory is to mitigate microbial risk to crew health, …

Quick journal club post on Legionella and Mycobacterium in premise plumbing

Came across this relevant article today; “The sporadic nature of Legionella pneumophila, Legionella pneumophila Sg1 and Mycobacterium avium occurrence within residences and office buildings across 36 states in the United States“.   Abstract Aim Premise plumbing may disseminate the bacteria Legionella pneumophila and Mycobacterium avium, the causative agents for legionellosis and pulmonary nontuberculous mycobacterium disease …

Journal Club: Dynamic Human Environmental Exposome Revealed by Longitudinal Personal Monitoring

Just got pointed to this paper by Paula Olsiewski.   Not necessarily a fan of another “-ome” word, but this seems like a really interesting study where they did intensive monitoring of environmental exposures of a few people over time.  Abstract below: Human health is dependent upon environmental exposures, yet the diversity and variation in exposures …

Journal Club: “Microwave detection and quantification of water hidden in and on building materials…”

Just a quick journal club post here, got pointed to this really interesting sounding article by David Thaler recently “Microwave detection and quantification of water hidden in and on building materials: implications for healthy buildings and microbiome studies.” As I understand the problem, it can be hard to quantify water in buildings, particularly water hidden …

Postdoc on deep sea microbiome analysis in Rio de Janeiro

Posting on behalf of Raquel Peixoto   A postdoctoral position is available at the Department of Microbiology at the Federal University of Rio de Janeiro. Applications are invited for a 3-year postdoctoral research position. The researcher will work with deep sea samples (sediments, corals, sponges and water) collected at ~700m depth. In addition, the researcher will work with …