Metagenomic Binning / Assembly
Posted a request to Twitter about Metagenomic dinners and assemblers and got a lot of useful responses so collected them together into a Wakelet. See below:
Author: Jonathan Eisen
I am a Professor at U. C. Davis. My lab is in the UC Davis Genome Center and I hold appointments in the Department of Medical Microbiology and Immunology in the School of Medicine and the Department of Evolution and Ecology in the College of Biological Sciences.
My research focuses on the origin of novelty (how new processes and functions originate). To study this I focus on sequencing and analyzing genomes of organisms, especially microbes and using phylogenomic analysis (see my lab site here which has more information on lab activities). In addition to research, I am heavily involved in the Open Access publishing and Open Science movements.
Wanted: Workers for the COVID19 Mass Testing Operations for UC Davis and Healthy Davis Together
Wanted: Workers for the COVID19 Mass Testing Operations for UC Davis and Healthy Davis Together Looking for a temporary job in the Davis/Sacramento area and want to help with COVID19 testing? See below. Needed right now “Mass Screening Kiosk Workers” to assist with operations at the site where people come in to provide saliva samples …
Compilation of guidance (from a few sources) on School Reopening
About a month ago I posted a request for information about guidance for school reopening. See the post here: https://microbe.net/2021/02/06/compiling-information-about-covid19-transmission-masks-filtration-schools-etc/ I spent a while looking at the responses and also soliciting some more and ended up with a few really good documents / sites with information about school reopening. These are Schools for Health. From …
Compiling Information about COVID19 transmission, masks, filtration, schools, etc.
UPDATE March 24, 2021. Wrote a summary post here: https://microbe.net/2021/03/24/compilation-of-guidance-from-a-few-sources-on-school-reopening/ Trying to collect some of the various information about COVID19 transmission and related topics including masks, schools, CO2, variants, etc. Mostly from Twitter threads and News articles Masks Wall Street Journal: Double Face Masks? N95? Protect Yourself Against New Covid-19 Variants With These Mask …
Wanted – science driven guidelines for deciding if and how to keep open / reopen schools re: #COVID19
I am compiling some materials on science driven guidelines for how to decide if and how to keep open and/or reopen schools in the face of COVID19. Here are some I have compiled that I seem to be useful. I would love other examples. (Updated 12/21 at 3 PM) National Academy of Sciences Reopening K-12 …
NAS “Airborne Transmission of SARS-CoV-2” meeting webcast available #Covid19
Webcast Recording Now Available: Airborne Transmission of SARS-CoV-2 Virtual Workshop August 26-27, 2020 Thank you for participating in our two-day workshop. To view the webcast recording click on this link: https://www.nationalacademies.org/event/08-26-2020/airborne-transmission-of-sars-cov-2-a-virtual-workshop Event Description There is much we don’t know about the transmission of SARS-CoV-2, the virus that causes COVID-19. We know it can spread from …
Microbial genome bioinformatics postdoc at UC Berkeley – IGI and Banfield Lab
Source: Banfield-lab bioinformatics postdoc announcement – Google Docs Postdoctoral Scholar: Microbial genome bioinformatics – Innovative Genomics Institute, UC Berkeley The Banfield Lab (https://nanogeoscience.berkeley.edu/) and Innovative Genomics Institute (https://innovativegenomics.org/) at the University of California, Berkeley invite applications for a Postdoctoral Researcher position in the field of genome-resolved metagenomics. Our group specializes in generating novel insights …
Interesting discussion about wastewater and COVID19
Interesting discussion of sewage and COVID19. Interview / discussion led by Andrew Revkin (Columbia University’s Earth Institute) and includes Rolf Halden (Arizona State University), Jeff Schlegelmilch (Columbia’s National Center for Disaster Preparedness) and Angela Rasmussen (Columbia’s Mailman School of Public Health).
Resources on Novel Coronavirus from the American Society for Microbiology #COVID19
The American Society for Microbiology has a useful resource on COVID19 and the novel coronavirus. This includes some links, slides, videos, information about ASM activities, and more. See: COVID-19 is a pneumonia-like disease with symptoms including fever, dry cough and shortness of breath that was first identified in Wuhan, China. The disease is caused by …
Preprint / news story of interest – new #coronavirus found in sewage, possible surveillance method
Quick post here. There is a news story about a preprint of possible interest. Scientists report (in the non peer reviewed preprint) that they were able to find evidence for the novel coronavirus in sewage even before cases were reported in the town where the sewage is from. Dutch scientists were able to find the …