Tag: GitHub

Quick post – this looks potentially very useful – ATLAS – comprehensive infrastructure for assembly, annotation, & genomic binning of metagenomic data 

By Jonathan Eisen   Posted in .Featured Bioinformatics Methods and Tools Sequencing
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OK I have not tried this out yet but this could be of interest. ATLAS (Automatic Tool for Local Assembly Structures) is a comprehensive multi-omics data analysis pipeline that is massively parallel and scalable. ATLAS contains a modular analysis pipeline for assembly, annotation, quantification and genome binning of metagenomics and metatranscriptomics data and a framework …

Teaching bioinformatics using IPython Notebooks

By Greg Caporaso   Posted in Miscellaneous Training and Courses
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I’ve been teaching undergraduate and graduate bioinformatics for three years at Northern Arizona University. This semester I tried an experiment in my undergraduate course: I decided to ditch slides and instead use IPython Notebooks to present my course materials. This turned out to be hugely successful, and resulted in an early version of an online …