Diversify Your Microbiome by Rock Climbing Indoors

When a recently published paper entitled “Microbial Sequencing Analyses Suggest the Presence of a Fecal Veneer on Indoor Climbing Wall Holds” showed up in my NCBI digest, I got excited.  However, my excitement died a little when I actually read the paper. Most importantly, the title is slightly deceptive, as only 9% of all reads …

Frightening Levels of Antibiotic Resistance and Capacity for Horizontal Gene Transfer Reported in a Wastewater Treatment Plant

Ah, the antibiotic resistance problem again.  Yes, we know that antibiotic overuse-both in humans and in agriculture, contributes.  This is not surprising.  But how does our built environment contribute to the spread of antibiotic resistance genes?  The built environment is a perfect place for host and environmental microbes to collide and share gene, including antibiotic …

Are Faster Diagnostics (Finally) Here?

We are all quite familiar with the age-old problem: many times, the diagnosis of the microbial agent responsible for an infection takes days.  In the best of cases, a broad spectrum antibiotic is prescribed while doctors await lab results, which contributes to the growing problem of antibiotic resistance.  In the worst cases, the patient does …

What’s Your Kardashian Index?

Today a colleague sent me a link to a Genome Biology paper entitled “The Kardashian index: a measure of discrepant social media profile for scientists.”  At first glance, it reminded me of Greg Caporaso’s post about Twitter last month.  But as I continued to read, the slight truth behind the premise described in the paper fascinated, …

New Joint Initiative from the Knight and Sogin Labs as a Follow-up to the MoBEDAC Initiative

If you’ve been reading our posts, you are quite familiar with our efforts at characterizing the bacterial and fungal communities of the built environment. We’ve described our study design, experimental protocols, and results. One thing we may have left you wondering about, however, is the nuts and bolts behind the analyses we and other MoBe …