The Guardian is reporting that lead contamination may be a problem “in every major city east of the Mississippi,” and that, as in Flint, contamination may be deliberately covered up by local water utilities through a loosely organized program of test gaming. Lead isn’t very soluble in water. If you want your tests to come …
New papers from the past week on the interactions between humans, buildings, and microbes. Microbes in buildings Comprehensive analysis of the skin fungal microbiota of astronauts during a half-year stay at the International Space Station – Takashi Sugita – Medical Mycology ($$) The International Space Station (ISS) is a huge manned construct located approximately 400 km …
(Update: This is probably at the NIST campus in MD… though it doesn’t actually say on their website) NIST is hosting an interesting sounding workshop on “Standards for Microbiome Measurements“. The workshop will be held on April 4-5th 2016 (presumably on the NIST campus in Boulder, CO). Information about the workshop below: Purpose: This NIST-NIAID workshop will seek …
I’m working on a manuscript where we analyze OTU co-occurrence patterns using network analyses as well as the traditional approaches (ordination, alpha diversity, etc.). This means that we have to include some equations in our methods and so for the first time, I am using Authorea and LaTeX. I am getting used to working with the …
Posting this which I received by email: Colleagues, We are thrilled to announce the launch of VERVE Net (https://www.protocols.io/g/verve-net), an on-line platform that equips the virus ecology community with a means to easily run, modify, publish and discuss laboratory, field and bioinformatic protocols. The forum also provides new ways to navigate the literature (a publication …
Last week I had the opportunity to present a lecture on the history of DNA sequencing in Jonathan Eisen’s EVE 161 Microbial Phylogenomics course. This lecture uses Elaine Mardis’ excellent review papers on the next generation sequencing methods as a guide (and required reading). You can see videos of both Dr. Mardis and Dr. Eisen presenting lectures on this topic. …
“All right, but apart from the sanitation, medicine, education, wine, public order, irrigation, roads, the fresh water system and public health, what have the Romans ever done for us?” from Monty Python’s Life of Brian When they conquered large parts of Europa and the Mediterranean in the 1st-3rd centuries AD, the Romans brought a lot of …
I made a Storify summary of the Tweets from a workshop at the Pacific Symposium on Biocomputing that I attended on Tuesday on Computational Microbiology (with a big focus on microbiomes). [<a href="//storify.com/phylogenomics/psb16-session-on-microbiomes” target=”_blank”>View the story “#PSB16 session on computational microbiome #microbiomes ” on Storify]
Our food comes into contact with a lot of different materials and machines before it reaches our plates. The agriculture industry tries hard to ensure proper food safety by testing random representative samples of each batch of produce or food product before sending it out for distribution. They cannot send out the batch until they …
Happy New Year to you all! Here are some interesting new papers that I found over the holidays. Floors Rapid assemblage of diverse environmental fungal communities on public restroom floors – Jennifer Fouquier – Indoor Air An increasing proportion of humanity lives in urban environments where they spend most of their lives indoors. Recent molecular studies …