I have been going through old files and notes and scanning some of the more interesting things. One thing I personally find fascinating are notes from talks from a whiles back. So I am going to post some of these notes – in a method I call “retroblogging”. Perhaps I will fake-live-tweet these past talks …
Just announced: @ASM Conference on The Individual Microbe: Single-cell Analysis and Agent-based Modeling March 18—20, 2016 ASM Headquarters Washington, DC. @ASM Conferences are designed to foster interaction and facilitate collaboration between 50 invited participants by having in-depth discussions on a single topic and serving as an incubator for bringing new scientific specialty meetings to the …
Three weeks ago I stood in front of the 60 attendees of the STAMPS course and asked, “How many of you are currently working with shotgun metagenomes?” Ten to fifteen people raised their hands. In contrast, almost all had their hands in the air when I asked how many were expecting to work with shotgun …
OK this looks like it will be really really interesting. Laurie Garrett sent me a link to this announcment about a meeting of the Empiricist League in New York: What are the 15,000 microscopic lifeforms that live on the subway? How disgusting are the contaminants in the Gowanus Canal? Can we use technology to stop …
I recently came across this detailed review “Metanalysis: Cleaning Hospital Room Surfaces to Prevent Health Care—Associated Infections” from the Annals of Internal Medicine. I think this is a fascinating topic because hospitals have to walk such a fine line with regards to microbes. On the one hand they want to avoid the probably counter-productive “kill …
I’m enjoying making maps of participants for kittybiome, a new participatory research project on the microbiome of cats. It was very easy to make this map using Google Maps. (And using Google Maps is particularly appropriate for the project because we have a celebrity cat named NDA, who lives with inventor of Google Maps participating in the project.) Here …
There is an interesting paper out a few days ago in PeerJ: MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities. By Dongwan D. Kang, Jeff Froula, Rob Egan, Zhong Wang​. The key to what they do in the paper is summarized in Figure 1: The legend is below: There are three preprocessing steps before MetaBAT is …
According to a recent BBC news article, NASA is doing a Mars simulation project to see if six live human beings can survive being isolated in a dome together. From a MoBE perspective, it would be cool to study this system. It’s completely closed to outside microbes – the people living in this dome have to …
A new paper in Frontiers in Microbiology reports the effect of plants on microbes in the environment. It’s about a plant in a box, so if you like cheesy 80’s music, you could play the song Living in a Box from the band with the same title. Here is the study: Microbiome interplay: plants alter microbial …
Mental health and its possible relation to the microbiome is a controversial topic in today’s news. Here’s new research suggesting that schizophrenia may be linked to the oropharyngeal microbiome, as the study found “high-level differences” in bacteria of people diagnosed with the disorder and of those without. If true, this could add insight into the …