MoBE Early Career Workshop

Last week, Melissa Dsouza and Jack Gilbert at the University of Chicago hosted a Sloan sponsored MoBE Early Career Workshop. I had the pleasure of attending this well organized event and was inspired by this highly intelligent and motivated group of scientists. The future for the MoBE is bright indeed if these scientists are able to find jobs …

Must read of the month: paper on impact of “Relic DNA”  on microbial diversity studies

I was casually browsing Twitter yesterday when something caught my eye DNA from dead #bacteria (and extruded DNA) may inflate species counts (depending on protocol). Early DNAse step? https://t.co/YQvUJq10Df – Michael J Wise (@some_wise) March 22, 2016 This Tweet embedded one from Carl Zimmer. Here is the original: The Earth is filled with relic DNA. https://t.co/eJ0lmggmAw …

21st Annual International Meeting on Microbial Genomes at Lake Arrowhead 9/18-22

The meeting page for the 21st Annual International Meeting on Microbial Genomes at Lake Arrowhead is now up.  This has been one of my favorite meetings for many many years (full disclosure – I am now a co-organizer and have been for the last few meetings).  Note – the meeting is NOT just about genomes – it …

Making tables in LaTeX

I’m working on a manuscript where we analyze OTU co-occurrence patterns using network analyses as well as the traditional approaches (ordination, alpha diversity, etc.). This means that we have to include some equations in our methods and so for the first time, I am using Authorea and LaTeX. I am getting used to working with the …

Storify wrap up of #PSB16 Session on Computational Microbiology #microbiomes

I made a Storify summary of the Tweets from a workshop at the Pacific Symposium on Biocomputing that I attended on Tuesday on Computational Microbiology (with a big focus on microbiomes). [<a href="//storify.com/phylogenomics/psb16-session-on-microbiomes” target=”_blank”>View the story “#PSB16 session on computational microbiome #microbiomes ” on Storify]

Wrap up of talk by Norm Pace on “Metagenomics and the Tree of Life”

Norm Pace gave a talk at UC Davis yesterday on “Metagenomics and the Tree of Life”. I and a few other people posted live Tweets from the talk which I have compiled together via the Storify system.  This “Storify” is embedded below. In addition, Lisa Cohen, who was at the talk posted her notes which …

Storify of tweets from Microbiology of the Built Environment 2015

Sadly I was unable to make the MoBE 2015 meeting… it’s the first one I’ve missed since they started in 2012.  From following the tweets, it sounded like a great and productive meeting as usual!   Here’s the Storify for anyone else who wants to see what happened… hopefully we’ll get out some blog posts from …