21st Annual International Meeting on Microbial Genomes at Lake Arrowhead 9/18-22

The meeting page for the 21st Annual International Meeting on Microbial Genomes at Lake Arrowhead is now up.  This has been one of my favorite meetings for many many years (full disclosure – I am now a co-organizer and have been for the last few meetings).  Note – the meeting is NOT just about genomes – it …

Walls talk – or at least hold many secrets a wall whisperer can reveal

There has some coverage of new work from Maria Gloria Dominguez-Bello et al. about microbes in homes (across the world).  See for example CBS News: What bacteria may reveal about your home This is basically a reprinting of an Associated Press article by Lauran Neergaard: Urbanization leads to change in type of bacteria in the home Also see this …

December Mothur Workshop, part 1

Pat Schloss (pdschloss at gmail.com) offers excellent workshops on the Mothur software for analyzing 16S rRNA data for bacteria. He’s just announced the next one (February 8 to 10, 2016 near the Detroit airport). I had the pleasure of attending the December workshop. A diverse and international group attended the workshop, with many folks who are interested in the human microbiome. …

Shifting Focus to the Good Bacteria in Water

Often on this blog, we talk about biofilms in water systems or water-borne pathogens. Even when we discuss the drinking water microbiome, it is seldom with a focus on any particularly beneficial bacteria. Although there has been some discussion about what essentially amounts to probiotics for water, there seems to be little literature in the area …

New papers on microbiology of the built environment, December 12, 2015

Here is a new set of papers that came out in the past week(s) that I posted at MicrobiomeDigest, but that I also wanted to share here. Three of these papers are from BMC’s Microbiome journal, which recently has published several other built environment microbiology papers, so it’s worth checking out. Microbes in buildings Moisture …

Who is in the operating room during c-section deliveries?

Infants born via c-section have a microbiome community composed mostly of skin bacteria [1-3], but the source of these skin bacteria is unknown. People quickly shed bacteria into their environment, leaving their own bacterial signature in a room within hours [4]. Do hospital operating rooms harbor skin bacteria that could colonize c-section delivered infants? A …

Sloan Microbiology of the Built Environment Data Analysis Workshop (San Diego, CA)

Announcement: Sloan Microbiology of the Built Environment Data Analysis Workshop (secrets of QIIME, VAMPS and QIITA) April 4-5, 2016 University of California, San Diego Application Deadline — February 15, 2016 — mitchellsogin@gmail.com This workshop, staffed by the developers of QIIME, VAMPS and QIITA, invite participants from the Microbiology of the Built Environment program to learn …

Sloan Microbiology of the Built Environment Data Analysis Workshop (secrets of QIIME, VAMPS and QIITA)

Submitted to me by Rob Knight. Announcement: Sloan Microbiology of the Built Environment Data Analysis Workshop (secrets of QIIME, VAMPS and QIITA) April 4-5, 2016 University of California, San Diego Application Deadline — February 15, 2016 — mitchellsogin@gmail.com This workshop, staffed by the developers of QIIME, VAMPS and QIITA, invite participants from the Microbiology of …

Bugs in space: How microbes are surviving on astronauts

Other than the now-discredited claim that there are 10 times more microbial cells than human cells on the body, this is quite an interesting post about the ongoing human microbiome research on the International Space Station (ISS).  Obviously something we’re very interested in from our own work in this area. Bugs are winning out, and …