There is a new paper of interest from Jill Banfield’s lab. I found out about it via Twitter: Study on the NICU microbiome out now in @MicrobiomeJ – The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms. https://t.co/GEtMkLxwUy @bmbrook @MattagenOlmics @mcgrath_bio @dahanome — The Banfield …
My collaborator, Marina LaForgia, and I are gearing up to start processing some plant rhizosphere samples for metagenomic sequencing. We collected more samples than we can afford to process (as is life) and are starting to make the hard decisions about which samples to move forward with. This brought us to the topic of whether …
NIH/NIAID is seeking comments on their recently released Tuberculosis Strategic Command. See: NIAID Tuberculosis Strategic Plan Request for Information (RFI) I have copied the announcement from the release below: ——————————————— NIAID Tuberculosis Strategic Plan Request for Information (RFI) Purpose This Notice is a time-sensitive Request for Information (RFI) inviting comments and suggestions on the framework …
New report on Synthetic Biology from the National Academies of Sciences, Engineering and Medicine that may be of interest. Synthetic biology expands the possibilities for creating new weapons — including making existing bacteria and viruses more harmful — while decreasing the time required to engineer such organisms, concludes a new report by the National Academies …
Question of the day. Where do we draw the line in terms of privacy when sampling sewer systems? I have had some major concerns about microbiome studies using sewer system samples in the past. And of course people are trying to use sewer system studies to look at all sorts of other epidemiology related data. …
I’m going to guess that most people reading this have at least heard of Twitter, if not used it themselves. Presidents tweet government policy, literal revolutions have been fostered on Twitter, and celebrity feuds consume the tabloids. But what is it? And how might it help your science? Twitter is just a platform… on the …
We will have more about this here at some point but wanted to let people know about it ASAP. Check out the link below for details on a really interesting indoor chemistry project that is part of the a Sloan Foundation program. UT leads unprecedented experiment aimed at identifying the key causes of indoor air pollution. …
New paper of interest: The Airplane Cabin Microbiome | SpringerLink Abstract: Serving over three billion passengers annually, air travel serves as a conduit for infectious disease spread, including emerging infections and pandemics. Over two dozen cases of in-flight transmissions have been documented. To understand these risks, a characterization of the airplane cabin microbiome is necessary. …
The last class! We started class with students taking the same survey that they took on the first day of class. This took about 30 minutes. Then came time for students to analyze the Sanger sequences that they had prepared from the week before. Despite detailed instructions, students had a lot of questions in part …
This preprint seems like it may be of interest to folks: Precise prediction of antibiotic resistance in Escherichia coli from full genome sequences | bioRxiv Basically, the authors showed that, using a machine learning approach, they can quite accurately predict antibiotic resistance in E. coli from whole genome data. The emergence of microbial antibiotic resistance …