Save the Microbes

Gareth Griffith’s Slate article (2012) on endangered microbes told a story that had honestly never occurred to me. Sure, there are endangered species all over the world, and we are all too aware of organizations like the IUCN that classify and aim to preserve such creatures. But none of the organisms on IUCN’s Red List are microbes. …

Harvard Magazine covers Sloan grantee Curtis Huttenhower’s research: microbes in transportation systems

In November, 2012, Curtis Huttenhower began work (with funding from the Sloan Foundation) to examine the transmission of human-associated microbes by public transportation surfaces. An article on “Big Data” in the current issue of Harvard Magazine includes a description of Huttenhower’s work in the lead article “Why “Big Data” Is a Big Deal.” After very …

Probiotics: The Good, the Bad, The Unknown, and the Crazy

Microbiology is on a roll, it’s been an amazing couple decades of discoveries that have transformed our understanding of the roles that microbes play in human health.  And this knowledge has pushed its way into popular culture.  Every couple of days I see another popular media article about the influence of microbes on something else; …

“Counterinsurgency Doctrine Applied to Infectious Disease” by Major Kirkup

Just finished reading this review article preprint on PeerJ by Major Ben Kirkup from the Walter Reed Army Institute of Research.  Called “Counterinsurgency Doctrine Applied to Infectious Disease” this article reviews the existing literature on the human microbiome, gives some background on military counterinsurgency doctrine, and then applies insights from the latter to the former. …

Shades of Grey in Sterility

It’s always hard, especially in today’s world, to find the shades of grey in any topic. Everything in media is portrayed as black and white because, frankly, it’s more striking. Similarly, most people are interested in either really beneficial microbes that can be used therapeutically or the pathogens that can kill us. We have studies …

Imagine a sterile human life

According to various news stories that we’ve blogged about in the last year you should worry about “germs” on your cellphone, doorknobs, toothbrush, dishwasher, houseplants, lemon slices, bouncy houses, laundry, etc.  Not to mention avoiding handshakes… or really any contact with other living beings such as your dog or cat. So this got me thinking… …

Studying – not wantonly killing – the microbes around us and the rise of the “microbiology of the built environment”

Imagine you have a camera with a special “anti-macro” lens.  This lens scrubs from any image all plants and animals and other “macro” organisms.  And this lens also highlights  the remaining living things – the microorganisms – anywhere in the frame (including those that were in or on the macro organisms removed from the image). …

Baby Brandon Bubba Brooks, the scientist and the twin

Most people who know me call me Bubba. The name you will find on a paper that just came out, is my “official” name, Brandon. However, my first given name is, in fact, Bubba, a moniker I acquired during my brief hospitalization as a premature infant, the very topic of my first first-author paper.  Since …

Microbiome of the NICU Resembles that of Premature Infants

We know that human babies born through vaginal birth are colonized by their mother’s microbes but what about the case of premature infants? A paper published by Jill Banfield and colleagues as part of a Sloan-funded project investigates the connection between microbial communities of the neonatal intensive care unit (NICU) and those of the premature infant gut. Premature infants …