New papers on Microbiology of the Built Environment, October 21, 2016

Microbes indoors How do we make indoor environments and healthcare settings healthier? – Jack A. Gilbert – Microbial Biotechnology (OA) It is now well accepted that our modern lifestyle has certain implications for our health (Schaub et al., 2006), mainly as a result of our willingness to remove ourselves from the biological diversity of our …

New papers on Microbiology of the Built Environment, October 15, 2016

Microbes indoors Review: Microorganisms in Confined Habitats: Microbial Monitoring and Control of Intensive Care Units, Operating Rooms, Cleanrooms and the International Space Station – Maximilian Mora – Frontiers in Microbiology (OA) Indoor environments, where people spend most of their time, are characterized by a specific microbial community, the indoor microbiome. Most indoor environments are connected to …

Interesting short new paper in arXiv: Integrating citizen science with online learning to ask better questions

Interesting short new paper in arXiv: [1609.05763] Integrating citizen science with online learning to ask better questions Vineet Pandey, Scott Klemmer, Amnon Amir, Justine Debelius, Embriette R. Hyde, Tomasz Kosciolek, Rob Knight Abstract: Online learners spend millions of hours per year testing their new skills on assignments with known answers. This paper explores whether framing research questions …

New papers on Microbiology of the Built Environment, September 25, 2016

Microbes and buildings The Microbiome of Green Design: Sustainable building practices may have unforeseen consequences for microbial communities and human health – Carolyn Beans – BioScience ($40 for 1 day) Just as our bodies teem with microbial life, so, too, do the homes, offices, schools, and other indoor spaces where we spend the majority of our …

Software of interest: MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples

New software/tool of possible interest: Source: MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples Software: http://segatalab.cibio.unitn.it/tools/metamlst/ Abstract: Metagenomic characterization of microbial communities has the potential to become a tool to identify pathogens in human samples. However, software tools able to extract strain-level typing information from metagenomic data are needed. Low-throughput molecular typing schema such as Multilocus …

microbiology of the Built Environment session at Lake Arrowhead Microbial Genomes meeting

microBEnet sponsored a “Microbiology of the Built Environment” session at the Lake Arrowhead Microbial Genomes meeting earlier today. The schedule for the session is below Rachel Dutton University of California San Diego, La Jolla, CA “Genetics and Genomics of the Simple Microbial Communities from Cheese” Elizabeth Hénaff Weill Cornell Medicine, New York, NY “The Microbiome …

Lake Arrowhead Microbial Genomics #LAMG16 Report: Day 2

Esther Singer opened the day talking about “Metagenomics to Reveal Correlations between Switchgrass Ecotypes and their Microbial Communities”.  She told a nice story about the ecotype-specificity of the rhizosphere and phyllosphere microbial communities.  I was surprised that for some bacteria this was evident even at the phylum level… so big differences. Daria Van Tyne “Changes …

Dual postdoctoral fellowship opportunity to study the microbiology of the #ISS

This is so awesome. The Sloan Program in Microbiology of the Built Environment is offering a pair of postdoc fellowships to work on the microbiology of the International Space Station. Summary of the call is below, the compete information packet can be downloaded here.  And if that’s not cool enough, the next blog post is …

New papers on Microbiology of the Built Environment, September 10, 2016

Studying the 5 second rule, antibiotic resistance genes in indoor dust and sewers, Legionella in the air, and water treatment. Microbes on the floor Longer Contact Times Increase Cross-Contamination of Enterobacter aerogenes from Surfaces to Food — Robyn C. Miranda — Applied and Environmental Microbiology ($25 for 1 day) Bacterial cross-contamination from surfaces to food can …

OSTP call to action on saving soil

I really realize this is not perfectly “microBEnet” related but I think this is quite important and there are many “microbiome” components to this. Thus I think this is worth posting here. The White House Office of Science and Technology Policy is issuing a national Call to Action and forming an interagency group to protect America’s …