Source: The microbiome of the built environment and mental health | Microbiome | Full Text Andrew J. Hoisington, Lisa A. Brenner, Kerry A. Kinney, Teodor T. Postolache and Christopher A. Lowry When I saw the title of this I cringed a bit, worried that this paper would be overselling what we know about the microbiome and …
Introduction In 2013-2014, a metagenomics project called “Pathomap” collected 1,457 swab samples from the surfaces of all active subway stations throughout New York City (NYC), as well as samples from the Gowanus Canal and several parks. Each sample was sequenced to an average depth of 3.6 million reads (paired-end 125 nucleotides), generating a city-wide metagenomic …
Today marks the inaugural launch of mSystems, a new open access ASM journal on systems microbiology, founded by Dr. Jack Gilbert of Argonne National Laboratory and a Sloan-funded microbiome of the built environment researcher and collaborator to many readers of this blog. The mSystems Senior editorial board is comprised of a team of microbiome experts: …
New papers on microbes inside homes and musea, drinking water systems, during spa treatment, and in an urban estuary. Indoor air Relative and contextual contribution of different sources to the composition and abundance of indoor air bacteria in residences – Marzia Miletto and Steven E. Lindow – Microbiome (OA) We investigated the source-sink relationships of …
In this recent segment on Science Friday, Ira Glass interviews Stuart Firestein about how failure in science is not just inevitable, but is just as important to the advancement of knowledge as the success is. I know that every single person can relate to this idea, which actually applies to far beyond the sciences. I …
Behind the scenes: Microbial biogeography of a university campus My name is Ashley Ross (@ashanneross) and, during my final year as an undergraduate student in the Department of Biology at the University of Waterloo, I began to wonder which microorganisms I was contacting on a daily basis while on campus. Every day on my way …
Blog post prepared jointly by Andrew Doxey (@acdoxey) and Josh Neufeld (@joshdneufeld) The “aquariome” Back in 2013, as part of a project assessing aquarium microbial communities and their role in nutrient cycling, Laura Sauder (graduate student in the Neufeld lab) sequenced a shotgun metagenomic library from a freshwater aquarium biofilter that was installed on this …
Here is a new set of papers that came out in the past week(s) that I posted at MicrobiomeDigest, but that I also wanted to share here. Three of these papers are from BMC’s Microbiome journal, which recently has published several other built environment microbiology papers, so it’s worth checking out. Microbes in buildings Moisture …
A review by Maddox et al came out earlier this year on antimicrobial resistance in horses. Livestock are a common source of antimicrobial resistance genes since so many antimicrobials are used on a regular basis to raise these animals. Too slowly, laws are coming into place restricting antimicrobial use in livestock so that only when animals are …
Designers Martin Krzywinski and Barbara Jeannie Hunnicutt provide a peek behind the scenes, and explain how they developed a data visualization based on bacterial genome information derived from dust. Source: The Evolution of a Scientific American Infographic: Secret Life in Household Dust – Scientific American Blog Network This is an absolutely fascinating look behind the …